Mice Colony Social Behaviour Tracking System

Their world.
Observed.

TruMouse Pro combines 144-channel RFID identity recognition with automated video analysis to track up to 20 individually identified mice simultaneously, in a 1.2m x 1.2m arena.

RFID-verified identity tracking AI-powered pose estimation Up to 20 mice in one colony 41 automated behavioural metrics Months of continuous home-cage recording

A naturalistic arena,
built for long-term observation

TruMouse Pro arena โ€” real photo
  • Arena 1.2 m ร— 1.2 m naturalistic activity space
  • Tracking Fully automated, real-time identity & pose tracking
  • Non-invasive No wearables, no dyes, no surgical markers
  • Longevity Continuous operation over months to years
  • Home-cage link Supports connected nesting habitats
  • Modular Custom components & task modules on request
annotated_output.mp4 โ€” identity-labelled tracking overlay

Two gaps that limit
group behavioural research

Existing tools force a trade-off between identity reliability and experimental scale.

01 / Identity confusion

Pure video tracking loses individuals

In group-housed settings, video-only systems like DeepLabCut cannot reliably maintain individual identity across occlusions and crossings. Long-term experiments accumulate identity-switching errors that corrupt downstream analysis.

02 / Scale ceiling

Commercial systems cap at a handful of animals

Most commercial behavioural systems are designed for single-animal paradigms or small groups. Scaling to colony-level experiments โ€” where social structure emerges โ€” has historically required manual observation or compromised tracking.

TruMouse Pro

A 144-channel RFID floor array provides continuous, identity-certain localisation for up to 20 animals simultaneously โ€” resolving both problems within a single integrated system designed for long-term home-cage deployment.

Three layers,
one coherent dataset

Every output carries an identity label. Every identity label is RFID-verified.

01 Identity

RFID floor array

144 reader units arranged in a 12 ร— 12 grid beneath the arena floor. Each subcutaneously implanted tag is read continuously, providing ground-truth spatial position and identity for every animal โ€” regardless of occlusion or grouping.

02 Pose

Industrial video capture

Global-shutter industrial cameras with infrared illumination record high-frame-rate footage synchronised to RFID timestamps. A proprietary algorithm provides fast and accurate matching of identities to trajectories, while maintaining full compatibility with DeepLabCut.

03 Analysis

Identity fusion engine

A proprietary matching algorithm fuses RFID identity signals with video tracklets, producing a unified dataset where every pose, every trajectory, and every social interaction is attributed to a named individual. 41 metrics are computed automatically.

Native DeepLabCut compatibility. TruMouse Pro extends DLC's pose estimation with reliable identity labels โ€” addressing the identity-switching problem that limits DLC in group-housed settings.

Inspired by Live Mouse Tracker. Adopting a similar approach to this outstanding open-source paradigm, we deliver a complete, out-of-the-box solution so your laboratory can focus entirely on scientific research, freeing you from the burdens of hardware assembly and parameter troubleshooting.

41 metrics, automatically.
Every individual. Every session.

Output is structured CSV and annotated video โ€” ready for direct import into Python, R, GraphPad Prism, or any downstream analysis tool.

Individual locomotion

8 metrics
Total distance travelledCumulative path length per individual (cm)
Mean velocityAverage speed in active zones (cm/s)
Immobility percentageProportion of time below movement threshold
Zone occupancyTime in open vs. sheltered regions (%)

Social interaction

15 metrics
Contact rateInteractions per hour, per individual pair
Nose-to-nose / nose-to-tailDirectional contact behaviours, frame-level precision
Approach / being-approached rateInitiator vs. receiver roles per dyad
Time in contactCumulative contact duration per pair (%)

Social hierarchy

1 composite index
Contact preference entropyInformation-theoretic measure of selective social affiliation across the group
Tube competition moduleOptional add-on captures natural tube-competition events, computing David's Score social dominance ranking without experimenter intervention

Environmental interaction

17 metrics
Food & water accessFeeder preference and access frequency per individual
Ramp & elevated zone usageVertical exploration and climbing behaviour (%)
Nest proximityAverage distance from nest entrance during active periods
Open zone exposureTime in exposed vs. sheltered environments (%)

Developed in an active
research environment

TruMouse Pro was built to solve real experimental problems โ€” and extensively validated against them.

01 Active Deployment

Running stably across 2 laboratories within the Institute of Biophysics (IBP), Chinese Academy of Sciences, with 3 systems in continuous operation.

CAS
02 Replication of Shemesh 2013

Hierarchy Tree Conclusion

  • Original Figure 5: Constructed a colony hierarchy tree based on the "chasing/being chased" pairwise interaction matrix. The C57ร—129 strain formed a clear linear hierarchy by Day 2, with 1 ฮฑ and 1โ€“2 ฮฒ individuals, remaining stable throughout the experiment.
  • Our Replication: Simultaneously recording 10 mice, we reached a similar clear hierarchical conclusion within 2 days. (See chart below)
Social hierarchy โ€” 10 mice, continuous recording Validated result
Daily Glicko Score cumulative social hierarchy chart for 10 mice

Glicko Score social hierarchy, 10 mice. Stable dominance ranking emerges within days of continuous home-cage recording โ€” replicating and extending the paradigm at larger colony scale. Data exported directly from the TruMouse Pro analysis pipeline.

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Built by researchers, for researchers

The system was designed and iterated by a team with direct experience in long-term rodent behavioural studies. Every design decision โ€” from the RFID floor density to the output format โ€” reflects the practical constraints of real laboratory work.

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Continuous operation reliability

The Pro version hardware architecture is engineered for year-scale continuous operation. The data transmission and power infrastructure has been validated for multi-week uninterrupted recording sessions.

Built on established paradigms

TruMouse Pro builds upon and extends continuous tracking and behavioural analysis frameworks developed by the community.

Part of a three-tool
research pipeline

TruMouse Pro covers colony-scale behaviour. For single-animal assays and chronic stress modelling, we've built two complementary tools.

Ready to see TruMouse Pro
in your laboratory?

We work with each research group to understand your specific experimental requirements before any commitment. Start with a conversation.

Contact: puze.li@student.unimelb.edu.au